Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs55748129 | chr2:29038309 | C/T | 9.62E-5 | 489 | 15.9 | 17.08 | 14.98 | KM Plot |
| THCA | rs55758036 | chr5:96202139 | T/C | 3.31E-6 | 487 | 15.17 | 16.9 | 20.83 | KM Plot |
| THCA | rs55767008 | chr5:96307359 | T/C | 3.52E-6 | 486 | 15.83 | 17.03 | 17.7 | KM Plot |
| THCA | rs55774326 | chr1:156898230 | C/T | 9.68E-7 | 469 | 16.63 | 14.8 | 11.3 | KM Plot |
| THCA | rs55780517 | chr3:139269531 | C/T | 5.24E-6 | 483 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs557864 | chr15:41471358 | T/C | 0.000287 | 490 | 17.6 | 15.87 | 15.3 | KM Plot |
| THCA | rs55794215 | chr10:70627117 | C/T | 9.28E-7 | 476 | 15.9 | 16.8 | 16.63 | KM Plot |
| THCA | rs55794610 | chr1:200577561 | C/T | 3.56E-10 | 479 | 15.17 | 20.5 | 9.57 | KM Plot |
| THCA | rs55798571 | chr10:81617563 | T/C | 0 | 474 | 15.97 | 15.9 | 5.92 | KM Plot |
| THCA | rs55809030 | chr1:22462703 | CCT/C | 2.96E-7 | 470 | 15.67 | 17.93 | 6.72 | KM Plot |
| THCA | rs55817881 | chr3:139265086 | T/A | 3.37E-5 | 489 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs55834130 | chr3:139269727 | A/C | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs55835350 | chr10:81801728 | A/T | 0.00025 | 489 | 16.2 | 15.83 | 11.73 | KM Plot |
| THCA | rs55835925 | chr3:53919080 | T/G | 6.33E-15 | 483 | 16.13 | 16.67 | 10.35 | KM Plot |
| THCA | rs55865922 | chr3:56601115 | T/C | 4.35E-6 | 482 | 16.87 | 12.53 | 8.47 | KM Plot |